Also, do you really need that space? You shouldn't bother chopping off bits and pieces of the motherboard if you don't need the space, and escpescially if you don't have a really good knowledge of the Wii motherboard. Also, another issue with a cut like that is that if you look at extreme trims like the ones Gman and ShockSlayer have used and shown off, they never cut a perfect 90 degree chunk out of the motherboard. This is because sanding well on those kinds of cuts is near impossible, and it sounds like sanding on shallower angles is painful too.
Before you go any further in trying to cut, go ahead and sand down the motherboard, wire up a few peripherals, and make sure your trim is working. There's no point in pulling riskier maneuvers on a potentially dead board, but I hope for the best. Good luck!